STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3371Uncharacterized protein. (91 aa)    
Predicted Functional Partners:
DFW101_0297
Periplasmic binding protein.
  
 0.995
DFW101_0299
Transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.995
DFW101_3372
Biotin and thiamin synthesis associated.
 
   
 0.949
DFW101_2597
Radical SAM domain protein.
 
  
 0.797
DFW101_2596
Small GTP-binding protein.
 
   
 0.795
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
    
 0.738
DFW101_1135
Hydrogenase, Fe-only.
 
     0.694
DFW101_0965
ABC-3 protein.
    
 0.679
DFW101_0967
Periplasmic solute binding protein.
  
 
 0.668
DFW101_1597
FecR protein.
  
  
 0.664
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.