STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3375Polyamine-transporting ATPase. (258 aa)    
Predicted Functional Partners:
DFW101_3376
Uncharacterized protein.
 
 0.999
DFW101_2442
Uncharacterized protein.
 
 0.996
DFW101_1194
Uncharacterized protein.
 0.994
DFW101_1195
Mammalian cell entry related domain protein.
 
 0.988
DFW101_2444
Mammalian cell entry related domain protein.
 
 0.982
DFW101_2441
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
  0.967
DFW101_0408
STAS domain-containing protein.
   
  0.954
DFW101_3374
Mammalian cell entry related domain protein.
 
   
 0.931
DFW101_3373
ABC_trans_aux domain-containing protein.
 
     0.849
DFW101_0216
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
  0.845
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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