STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3446Polar amino acid ABC transporter, inner membrane subunit. (237 aa)    
Predicted Functional Partners:
DFW101_3445
Phosphonate-transporting ATPase.
 
 0.999
DFW101_3447
Extracellular solute-binding protein family 3.
 0.997
DFW101_2307
Fe(3+)-transporting ATPase.
 0.984
DFW101_3633
Phosphonate-transporting ATPase.
 0.984
DFW101_3444
Polar amino acid ABC transporter, inner membrane subunit.
 
  
 
0.978
DFW101_3631
Extracellular solute-binding protein family 3.
 0.974
DFW101_1826
Extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.
 0.939
DFW101_2306
Extracellular solute-binding protein family 3; Belongs to the bacterial solute-binding protein 3 family.
 0.925
DFW101_2304
Polar amino acid ABC transporter, inner membrane subunit.
 
 
0.873
DFW101_0979
Ectoine/hydroxyectoine ABC transporter solute-binding protein.
 
 0.784
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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