STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DFW101_3503Phage portal protein, HK97 family. (425 aa)    
Predicted Functional Partners:
DFW101_3502
Uncharacterized protein.
 
   0.994
DFW101_3500
Phage head-tail adaptor.
 
 
 0.993
DFW101_3506
HK97 family phage major capsid protein.
 
 
 
 0.993
DFW101_0316
Uncharacterized protein.
  
   0.935
DFW101_3488
Uncharacterized protein.
  
   0.935
DFW101_1586
Uncharacterized protein.
   
   0.923
DFW101_3522
Terminase.
 
   
 0.837
DFW101_3356
Hemolysin-type calcium-binding region.
 
 
   0.787
DFW101_2889
Uncharacterized protein.
 
 
   0.786
DFW101_3499
Uncharacterized protein.
       0.776
Your Current Organism:
Desulfovibrio carbinoliphilus
NCBI taxonomy Id: 694327
Other names: D. carbinoliphilus subsp. oakridgensis, Desulfovibrio carbinoliphilus subsp. oakridgensis, Desulfovibrio sp. FW-101-2B, personal::FW-101-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.