STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ78171.1KEGG: msi:Msm_0696 Fe-S oxidoreductase; SPTR: Fe-S oxidoreductase; PFAM: B12 binding domain. (370 aa)    
Predicted Functional Partners:
ADQ78169.1
ATP-binding region ATPase domain protein; InterPro IPR003594; KEGG: tjr:TherJR_0431 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; SPTR: Putative uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.809
ADQ78170.1
Hypothetical protein; KEGG: bhy:BHWA1_01291 TPR domain-containing protein; SPTR: Putative uncharacterized protein.
       0.773
ADQ78168.1
InterPro IPR018060: IPR000005; KEGG: fjo:Fjoh_0538 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: DNA binding protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
       0.507
Your Current Organism:
Paludibacter propionicigenes
NCBI taxonomy Id: 694427
Other names: P. propionicigenes WB4, Paludibacter propionicigenes CCUG 53888, Paludibacter propionicigenes DSM 17365, Paludibacter propionicigenes JCM 13257, Paludibacter propionicigenes WB4, Paludibacter propionicigenes str. WB4, Paludibacter propionicigenes strain WB4
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