STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ78529.1Lipocalin family protein; COGs: COG3040 Bacterial lipocalin; InterPro IPR022271: IPR002446: IPR013208; KEGG: fjo:Fjoh_2134 lipocalin family protein; PFAM: Lipocalin family protein; SPTR: Lipocalin family protein; manually curated; PFAM: Lipocalin-like domain; Belongs to the calycin superfamily. Lipocalin family. (179 aa)    
Predicted Functional Partners:
ADQ78436.1
Domain of unknown function DUF1731; COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR001509: IPR013549: IPR010099; KEGG: bha:BH3889 cell-division inhibitor; PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; SPTR: Cell-division inhibitor; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777.
     0.669
ADQ78530.1
COGs: COG4585 Signal transduction histidine kinase; InterProIPR005467: IPR000014: IPR000700: IPR001610: IPR 003594: IPR018771: IPR013656: IPR013655: IPR013767: IPR011712; KEGG: nde:NIDE3092 putative sensor histidine kinase; PFAM: Transcription regulator,histidine kinase sensor-like; PAS fold-4 domain protein; PAS fold-3 domain protein; PAS fold domain protein; histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: Multi-sensor [...]
       0.477
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
    0.434
Your Current Organism:
Paludibacter propionicigenes
NCBI taxonomy Id: 694427
Other names: P. propionicigenes WB4, Paludibacter propionicigenes CCUG 53888, Paludibacter propionicigenes DSM 17365, Paludibacter propionicigenes JCM 13257, Paludibacter propionicigenes WB4, Paludibacter propionicigenes str. WB4, Paludibacter propionicigenes strain WB4
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