STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ79617.1Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; COGs: COG3467 flavin-nucleotide-binding protein; InterPro IPR011576; KEGG: bfs:BF4361 putative 5-nitroimadazole antibiotic resistance protein; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: 5-nitroimidazole antibiotic resistance protein; PFAM: Pyridoxamine 5'-phosphate oxidase. (181 aa)    
Predicted Functional Partners:
ADQ79505.1
COGs: COG3467 flavin-nucleotide-binding protein; InterPro IPR011576; KEGG: dds:Ddes_1163 pyridoxamine 5'-phosphate oxidase-related FMN-binding; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; SPTR: Pyridoxamine 5'-phosphate oxidase-related FMN-binding; PFAM: Pyridoxamine 5'-phosphate oxidase.
  
     0.764
ADQ79618.1
Protein of unknown function DUF2147; InterPro IPR019223; KEGG: fba:FIC_00696 hypothetical protein; PFAM: Protein of unknown function DUF2147; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2147).
       0.541
lon
ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
       0.445
ADQ80480.1
Phosphoenolpyruvate synthase; COGs: COG3382 conserved hypothetical protein; InterPro IPR005146; KEGG: pdi:BDI_1895 hypothetical protein; PFAM: B3/4 domain protein; SPTR: Putative uncharacterized protein; PFAM: B3/4 domain.
 
     0.421
Your Current Organism:
Paludibacter propionicigenes
NCBI taxonomy Id: 694427
Other names: P. propionicigenes WB4, Paludibacter propionicigenes CCUG 53888, Paludibacter propionicigenes DSM 17365, Paludibacter propionicigenes JCM 13257, Paludibacter propionicigenes WB4, Paludibacter propionicigenes str. WB4, Paludibacter propionicigenes strain WB4
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