STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADQ80885.1Peptidyl-dipeptidase Dcp; COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: bth:BT_2834 peptidyl-dipeptidase; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Peptidyl-dipeptidase Dcp; PFAM: Peptidase family M3. (697 aa)    
Predicted Functional Partners:
ADQ80884.1
KEGG: bvu:BVU_1096 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.594
ADQ80883.1
COGs: COG1238 membrane protein; InterPro IPR020143; KEGG: pdi:BDI_3097 putative integral membrane protein; SPTR: Putative uncharacterized protein; PFAM: SNARE associated Golgi protein.
       0.581
ADQ80886.1
Riboflavin biosynthesis protein RibF; COGs: COG0196 FAD synthase; InterPro IPR002606: IPR015864: IPR015865; KEGG: bfr:BF4346 putative riboflavin kinase; PFAM: Riboflavin kinase; FAD synthetase; SPTR: Putative riboflavin kinase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; Belongs to the ribF family.
       0.551
ADQ80882.1
COGs: COG3023 Negative regulator of beta-lactamase expression; InterPro IPR002502; KEGG: cag:Cagg_2282 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; SPTR: N-acetylmuramoyl-L-alanine amidase AmiD; PFAM: N-acetylmuramoyl-L-alanine amidase.
       0.503
ADQ80887.1
HAD-superfamily hydrolase, subfamily IA, variant 3; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834: IPR006402: IPR005833; KEGG: bfs:BF4148 putative haloacid dehalogenase-type hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Putative haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; Epoxide hydrolase N-terminal domain-like phosphatase.
 
     0.495
Your Current Organism:
Paludibacter propionicigenes
NCBI taxonomy Id: 694427
Other names: P. propionicigenes WB4, Paludibacter propionicigenes CCUG 53888, Paludibacter propionicigenes DSM 17365, Paludibacter propionicigenes JCM 13257, Paludibacter propionicigenes WB4, Paludibacter propionicigenes str. WB4, Paludibacter propionicigenes strain WB4
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