STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM38361.1Hypothetical protein; COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR002616; KEGG: mka:MK0188 queuine/archaeosine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; SPTR: 7-cyano-7-deazaguanine tRNA-ribosyltransferase. (505 aa)    
Predicted Functional Partners:
AEM38359.1
KEGG: shc:Shell_0916 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.429
AEM38360.1
Hypothetical protein; PFAM: Post-segregation antitoxin CcdA; KEGG: hbu:Hbut_1444 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.429
Your Current Organism:
Pyrolobus fumarii
NCBI taxonomy Id: 694429
Other names: P. fumarii 1A, Pyrolobus fumarii 1A, Pyrolobus fumarii DSM 11204
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.