STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB35886.1Signal peptidase I; IMG reference gene:2506728718; PFAM: Peptidase S24-like. (328 aa)    
Predicted Functional Partners:
AGB36487.1
Signal peptidase I; IMG reference gene:2506729343; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
     
  0.900
AGB38074.1
Hypothetical protein; IMG reference gene:2506731012.
     
 
0.900
AGB38183.1
Signal peptidase I; IMG reference gene:2506731124; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
     
  0.900
atpE
Archaeal/vacuolar-type H+-ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
 0.793
AGB38411.1
Putative membrane protein, required for N-linked glycosylation; IMG reference gene:2506731365; PFAM: Oligosaccharyl transferase STT3 subunit; TIGRFAM: oligosaccharyl transferase, archaeosortase system-associated.
  
  
 0.789
AGB36442.1
Putative membrane protein; IMG reference gene:2506729297; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: exosortase/archaeosortase family protein; archaeosortase A, PGF-CTERM-specific.
  
   
 0.781
atpF
Archaeal/vacuolar-type H+-ATPase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 
  0.767
AGB37516.1
Hypothetical protein; IMG reference gene:2506730428; PFAM: Protein of unknown function (DUF1119).
  
     0.754
AGB37969.1
Hypothetical protein; IMG reference gene:2506730905; PFAM: Protein of unknown function (DUF552).
  
     0.752
AGB36167.1
Hypothetical protein; IMG reference gene:2506729013.
  
     0.748
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.