STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB36660.1Dipeptidyl aminopeptidase/acylaminoacyl peptidase; IMG reference gene:2506729520; PFAM: Prolyl oligopeptidase family. (703 aa)    
Predicted Functional Partners:
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.524
AGB36487.1
Signal peptidase I; IMG reference gene:2506729343; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
 
 
 0.498
AGB36150.1
Leucyl aminopeptidase (aminopeptidase T); IMG reference gene:2506728993; PFAM: Thermophilic metalloprotease (M29).
   
    0.463
infB
Translation initiation factor eaIF-5B; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2.
   
   0.461
rpoH
DNA-directed RNA polymerase, subunit H, RpoH/RPB5; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family.
    
   0.459
AGB38183.1
Signal peptidase I; IMG reference gene:2506731124; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
 
 
 0.457
AGB38237.1
Putative aminopeptidase; IMG reference gene:2506731179; PFAM: PA domain; Peptidase family M28.
  
   
 0.437
AGB38707.1
Esterase/lipase; IMG reference gene:2506731668; PFAM: alpha/beta hydrolase fold.
  
 
 0.437
AGB37282.1
Penicilin amidase; IMG reference gene:2506730187; PFAM: Penicillin amidase.
  
     0.417
AGB39458.1
Amidohydrolase, imidazolonepropionase; IMG reference gene:2506732461; PFAM: Amidohydrolase family.
  
     0.417
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.