STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmYHypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family. (198 aa)    
Predicted Functional Partners:
atpF
Archaeal/vacuolar-type H+-ATPase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.712
pus10
TIGR01213 family protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
 
   
 0.705
AGB38223.1
F0F1-type ATP synthase, subunit c/archaeal/vacuolar-type H+-ATPase, subunit K; IMG reference gene:2506731164; PFAM: ATP synthase subunit C.
 
     0.699
AGB36072.1
Putative Zn-finger protein; IMG reference gene:2506728909.
  
     0.684
AGB36519.1
Putative Fe-S oxidoreductase; IMG reference gene:2506729375; PFAM: Radical SAM superfamily; Helix-hairpin-helix motif.
  
     0.666
atpC
ATP synthase A1, C subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.659
AGB36167.1
Hypothetical protein; IMG reference gene:2506729013.
  
     0.629
AGB37156.1
Putative transcriptional regulator; IMG reference gene:2506730058; PFAM: Helix-turn-helix.
  
     0.629
AGB38356.1
Uncharacterized protein conserved in archaea; IMG reference gene:2506731308; PFAM: RNA polymerase Rpb4.
 
     0.612
AGB39093.1
Single-stranded DNA-binding protein; IMG reference gene:2506732077.
  
     0.610
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.