STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB37753.1Peptide chain release factor 1 (eRF1); IMG reference gene:2506730679; PFAM: eRF1 domain 3; eRF1 domain 2; TIGRFAM: peptide chain release factor 1, archaeal and eukaryotic forms. (357 aa)    
Predicted Functional Partners:
AGB38188.1
Putative ATPase, Rnase L inhibitor (RLI) like protein; IMG reference gene:2506731129; PFAM: ABC transporter; Possible metal-binding domain in RNase L inhibitor, RLI.
  
 
 0.937
rpl15e
Ribosomal protein L15E; IMG reference gene:2506730578; PFAM: Ribosomal L15; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 0.920
prf1
Peptide chain release factor subunit 1 (aeRF-1); Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
  
  
 
0.915
rpl24
LSU ribosomal protein L24P; Located at the polypeptide exit tunnel on the outside of the subunit.
  
  0.897
rps15
Ribosomal protein S15P/S13E; IMG reference gene:2506729561; PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15.
 
 0.894
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
  
 0.892
rps3ae
Ribosomal protein S3AE; IMG reference gene:2506729558; PFAM: Ribosomal S3Ae family; Belongs to the eukaryotic ribosomal protein eS1 family.
  
  0.889
rps4e
Ribosomal protein S4E; IMG reference gene:2506732183; PFAM: S4 domain; Ribosomal family S4e; RS4NT (NUC023) domain; Belongs to the eukaryotic ribosomal protein eS4 family.
  
  0.880
rpl19e
Ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
  
  0.873
rpl22
Ribosomal protein L22/L17; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
  
  0.870
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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