STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB37797.1Methyltransferase family protein; IMG reference gene:2506730727; PFAM: Methyltransferase domain. (216 aa)    
Predicted Functional Partners:
AGB36847.1
IMG reference gene:2506729716; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit.
   
 0.900
AGB37730.1
Hypothetical protein; IMG reference gene:2506730656.
  
     0.643
AGB39532.1
Hypothetical protein; IMG reference gene:2506732543; PFAM: Protein of unknown function (DUF447).
  
     0.603
AGB36649.1
Putative nucleic acid-binding protein with PIN domain and Zn ribbon; IMG reference gene:2506729508.
  
 0.586
rps5
Ribosomal protein S5/S2; With S4 and S12 plays an important role in translational accuracy.
    
 0.575
AGB39466.1
IMG reference gene:2506732469; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family.
  
     0.569
AGB37771.1
IMG reference gene:2506730697; PFAM: Universal stress protein family.
  
     0.568
AGB37798.1
Cold shock protein; IMG reference gene:2506730728; PFAM: 'Cold-shock' DNA-binding domain.
   
   0.567
AGB36982.1
Archaeal flagella assembly protein J; IMG reference gene:2506729860; PFAM: Bacterial type II secretion system protein F domain.
  
     0.548
rps24e
Ribosomal protein S24E; IMG reference gene:2506730867; PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
  0.547
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.