STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB37804.1IMG reference gene:2506730734; PFAM: Aminotransferase class I and II. (359 aa)    
Predicted Functional Partners:
AGB38666.1
Hypothetical protein; IMG reference gene:2506731626.
  
     0.575
AGB37805.1
Putative transcriptional regulator; IMG reference gene:2506730735; PFAM: Helix-turn-helix.
       0.548
AGB37806.1
Hypothetical protein; IMG reference gene:2506730736.
       0.548
AGB37809.1
Molecular chaperone (small heat shock protein); IMG reference gene:2506730739; PFAM: Hsp20/alpha crystallin family; Belongs to the small heat shock protein (HSP20) family.
  
  
 0.547
AGB37910.1
Homoserine dehydrogenase; IMG reference gene:2506730842; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Homoserine dehydrogenase.
 
 
 0.543
AGB35889.1
Aspartate kinase; IMG reference gene:2506728722; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase; Belongs to the aspartokinase family.
 
 
 0.510
AGB39421.1
acyl-CoA synthetase/AMP-acid ligase; IMG reference gene:2506732422; PFAM: Domain of unknown function (DUF3448); Enoyl-CoA hydratase/isomerase family; AMP-binding enzyme; Zinc-binding dehydrogenase.
  
 
 0.495
hisC
IMG reference gene:2506732319; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase.
 
  
 0.492
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
 
 
 0.478
AGB39681.1
Ammonia permease; IMG reference gene:2506732699; PFAM: Ammonium Transporter Family; Nitrogen regulatory protein P-II; TIGRFAM: ammonium transporter; Belongs to the P(II) protein family.
     
 0.476
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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