Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB37913.1LVIVD repeat-containing protein; IMG reference gene:2506730845; PFAM: LVIVD repeat. (446 aa)    
Predicted Functional Partners:
AGB37912.1
Thioredoxin-like protein; IMG reference gene:2506730844; PFAM: NifU-like domain.
     0.866
AGB36459.1
IMG reference gene:2506729315; PFAM: HTH DNA binding domain.
  
     0.654
AGB38805.1
Cell division protein; IMG reference gene:2506731777; PFAM: Predicted permease.
 
     0.648
AGB37914.1
Transcriptional regulator/sugar kinase; IMG reference gene:2506730846; PFAM: ROK family.
       0.634
AGB36789.1
Hypothetical protein; IMG reference gene:2506729657.
  
     0.620
AGB36990.1
XapX domain protein; IMG reference gene:2506729869; PFAM: Protein of unknown function (DUF1427); TIGRFAM: XapX domain.
  
     0.610
AGB38986.1
ABC-type transport system, involved in lipoprotein release, permease component; IMG reference gene:2506731964; PFAM: Predicted permease.
 
     0.610
AGB39154.1
Alkylhydroperoxidase AhpD family core domain protein; IMG reference gene:2506732139; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain.
  
     0.597
AGB36212.1
Hypothetical protein; IMG reference gene:2506729062.
  
     0.587
AGB39736.1
Rhodanese-related sulfurtransferase; IMG reference gene:2506732754; PFAM: Rhodanese-like domain.
 
    0.574
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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