Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rps27aeRibosomal protein S27AE; IMG reference gene:2506730868; PFAM: Ribosomal protein S27a; Belongs to the eukaryotic ribosomal protein eS31 family. (44 aa)    
Predicted Functional Partners:
rps24e
Ribosomal protein S24E; IMG reference gene:2506730867; PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
 0.995
rpl40e
Ribosomal protein L40E; IMG reference gene:2506730955; Belongs to the eukaryotic ribosomal protein eL40 family.
  
   0.976
AGB38345.1
Putative Zn-ribbon RNA-binding protein with a function in translation; IMG reference gene:2506731297; PFAM: Domain of unknown function (DUF1610).
   
   0.972
rps17e
Ribosomal protein S17E; IMG reference gene:2506732544; PFAM: Ribosomal S17; Belongs to the eukaryotic ribosomal protein eS17 family.
  
   0.959
rpl29
LSU ribosomal protein L29P; IMG reference gene:2506732188; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
 
 0.956
rps3
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
   0.954
rpl15e
Ribosomal protein L15E; IMG reference gene:2506730578; PFAM: Ribosomal L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
   0.948
rpl37e
Ribosomal protein L37E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family.
   
   0.948
rps19e
Ribosomal protein S19E (S16A); May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
 
 0.945
rps6e
IMG reference gene:2506731039; PFAM: Ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
   0.940
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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