STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB38027.1Putative metal-binding protein; IMG reference gene:2506730965. (118 aa)    
Predicted Functional Partners:
AGB36982.1
Archaeal flagella assembly protein J; IMG reference gene:2506729860; PFAM: Bacterial type II secretion system protein F domain.
  
     0.719
AGB37911.1
ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase; IMG reference gene:2506730843.
  
     0.714
AGB39532.1
Hypothetical protein; IMG reference gene:2506732543; PFAM: Protein of unknown function (DUF447).
  
     0.707
AGB38345.1
Putative Zn-ribbon RNA-binding protein with a function in translation; IMG reference gene:2506731297; PFAM: Domain of unknown function (DUF1610).
  
     0.698
trm1
tRNA(guanine-26,N2-N2) methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
 
     0.690
AGB38191.1
Hypothetical protein; IMG reference gene:2506731132; PFAM: Uncharacterised protein family (UPF0146); Belongs to the UPF0146 family.
  
     0.674
AGB38249.1
DNA-binding protein, Tfx family; IMG reference gene:2506731192; PFAM: Sigma-70, region 4; TIGRFAM: DNA-binding protein, Tfx family.
 
     0.673
AGB35943.1
Leader peptidase family protein; IMG reference gene:2506728777; PFAM: Archaeal Peptidase A24 C-terminus Type II; Type IV leader peptidase family.
  
     0.654
AGB37218.1
Putative acyltransferase; IMG reference gene:2506730122; PFAM: Bacterial transferase hexapeptide (three repeats); Protein of unknown function, DUF583.
  
     0.624
cofC
Phospholactate guanylyltransferase; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor; Belongs to the CofC family.
  
     0.586
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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