STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB38588.1Hypothetical protein; IMG reference gene:2506731545. (306 aa)    
Predicted Functional Partners:
AGB38586.1
Hypothetical protein; IMG reference gene:2506731543.
     
 0.908
AGB38585.1
IMG reference gene:2506731542; PFAM: Gas vesicle synthesis protein GvpL/GvpF.
     
 0.907
AGB38587.1
Molecular chaperone (small heat shock protein); IMG reference gene:2506731544; PFAM: GvpH.
     
 0.797
AGB38589.1
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
     
 0.781
AGB38590.1
Gas vesicle protein K; IMG reference gene:2506731547; PFAM: Gas vesicle protein K.
     
 0.781
AGB38591.1
IMG reference gene:2506731548; PFAM: Gas vesicle synthesis protein GvpL/GvpF.
     
 0.765
AGB38592.1
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
     
 0.765
AGB38582.1
Nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase CobT; IMG reference gene:2506731539; PFAM: Gas vesicle synthesis protein GvpO.
     
 0.725
AGB38583.1
Gas vesicle protein GvpN; IMG reference gene:2506731540; PFAM: AAA domain (dynein-related subfamily); TIGRFAM: gas vesicle protein GvpN.
     
 0.722
gvpA
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
     
 0.711
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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