STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB38757.1Hypothetical protein; IMG reference gene:2506731719. (244 aa)    
Predicted Functional Partners:
AGB38758.1
Hypothetical protein; IMG reference gene:2506731720; PFAM: Polysaccharide pyruvyl transferase.
  
  
 0.648
AGB38756.1
Membrane protein involved in the export of O-antigen and teichoic acid; IMG reference gene:2506731718; PFAM: Polysaccharide biosynthesis protein.
  
    0.553
rfcS
DNA polymerase III, gamma/tau subunit; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcS subfamily.
  
 
 0.508
rfcL
AAA ATPase; Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA; Belongs to the activator 1 small subunits family. RfcL subfamily.
  
 
 0.508
AGB39661.1
DNA polymerase III, gamma/tau subunit; IMG reference gene:2506732679; PFAM: ATPase family associated with various cellular activities (AAA); Replication factor C.
  
 
 0.508
AGB39681.1
Ammonia permease; IMG reference gene:2506732699; PFAM: Ammonium Transporter Family; Nitrogen regulatory protein P-II; TIGRFAM: ammonium transporter; Belongs to the P(II) protein family.
       0.403
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.