STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB38948.1Hypothetical protein; IMG reference gene:2506731925. (126 aa)    
Predicted Functional Partners:
AGB38946.1
IMG reference gene:2506731923; PFAM: Probable cobalt transporter subunit (CbtB).
       0.889
AGB38947.1
IMG reference gene:2506731924; PFAM: Probable cobalt transporter subunit (CbtA).
       0.889
AGB36847.1
IMG reference gene:2506729716; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Respiratory-chain NADH dehydrogenase, 49 Kd subunit.
  
  
 0.868
AGB36854.1
IMG reference gene:2506729723; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-ubiquinone oxidoreductase chain 4, amino terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M.
 
  
 0.814
AGB36609.1
Formate dehydrogenase, alpha subunit, archaeal-type; IMG reference gene:2506729468; PFAM: Molybdopterin oxidoreductase; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: formate dehydrogenase, alpha subunit, archaeal-type.
  
  
 0.703
AGB38949.1
acetyl-CoA acetyltransferase; IMG reference gene:2506731926; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases.
       0.686
AGB36848.1
NADH:ubiquinone oxidoreductase subunit 1 (chain H); IMG reference gene:2506729717; PFAM: NADH dehydrogenase.
  
  
 0.537
AGB38950.1
Dihydroorotate oxidase A; IMG reference gene:2506731927; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2.
       0.534
AGB39552.1
PQQ repeat protein; IMG reference gene:2506732567; PFAM: PQQ enzyme repeat.
  
     0.416
AGB37180.1
Molybdenum-binding protein; IMG reference gene:2506730082; PFAM: TOBE domain; Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: molybdenum-pterin binding domain; ModE molybdate transport repressor domain.
       0.407
Your Current Organism:
Natronococcus occultus
NCBI taxonomy Id: 694430
Other names: N. occultus SP4, Natronococcus occultus DSM 3396, Natronococcus occultus SP4, Natronococcus occultus str. SP4, Natronococcus occultus strain SP4
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