VP1G_02317 protein (Valsa mali) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VP1G_02317

Uncharacterized protein. (401 aa)

Predicted Functional Partners:

VP1G_07341

0.672

VP1G_03970

0.654

VP1G_09436

0.583

VP1G_03103

0.562

VP1G_02155

0.548

VP1G_02140

0.532

VP1G_09172

0.528

VP1G_02461

0.526

VP1G_01234

0.520

VP1G_04539

0.505

Your Current Organism:

Valsa mali

NCBI taxonomy Id: 694573
Other names: V. mali var. pyri, Valsa mali var. pyri, Valsa sp. DD-2016

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VP1G_01234	VP1G_02140	A0A194UQF0	A0A194USR9	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	2Fe-2S ferredoxin-type domain-containing protein.	0.857
VP1G_01234	VP1G_02317	A0A194UQF0	A0A194UTT6	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Uncharacterized protein.	0.520
VP1G_01234	VP1G_02461	A0A194UQF0	A0A194UU32	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Peroxisomal hydratase-dehydrogenase-epimerase.	0.514
VP1G_01234	VP1G_07341	A0A194UQF0	A0A194V8B6	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.543
VP1G_01234	VP1G_09172	A0A194UQF0	A0A194VE09	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Uncharacterized protein YmaE.	0.857
VP1G_02140	VP1G_01234	A0A194USR9	A0A194UQF0	2Fe-2S ferredoxin-type domain-containing protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.857
VP1G_02140	VP1G_02317	A0A194USR9	A0A194UTT6	2Fe-2S ferredoxin-type domain-containing protein.	Uncharacterized protein.	0.532
VP1G_02140	VP1G_02461	A0A194USR9	A0A194UU32	2Fe-2S ferredoxin-type domain-containing protein.	Peroxisomal hydratase-dehydrogenase-epimerase.	0.430
VP1G_02155	VP1G_02317	A0A194UTG1	A0A194UTT6	Peroxisome assembly protein 12.	Uncharacterized protein.	0.548
VP1G_02155	VP1G_02461	A0A194UTG1	A0A194UU32	Peroxisome assembly protein 12.	Peroxisomal hydratase-dehydrogenase-epimerase.	0.669
VP1G_02155	VP1G_03103	A0A194UTG1	A0A194UVK8	Peroxisome assembly protein 12.	Peroxisomal membrane protein PER10.	0.947
VP1G_02155	VP1G_04539	A0A194UTG1	A0A194UZY8	Peroxisome assembly protein 12.	Peroxisome biogenesis factor 10.	0.999
VP1G_02155	VP1G_09436	A0A194UTG1	A0A194VE87	Peroxisome assembly protein 12.	Peroxisomal targeting signal receptor.	0.989
VP1G_02317	VP1G_01234	A0A194UTT6	A0A194UQF0	Uncharacterized protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.520
VP1G_02317	VP1G_02140	A0A194UTT6	A0A194USR9	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.532
VP1G_02317	VP1G_02155	A0A194UTT6	A0A194UTG1	Uncharacterized protein.	Peroxisome assembly protein 12.	0.548
VP1G_02317	VP1G_02461	A0A194UTT6	A0A194UU32	Uncharacterized protein.	Peroxisomal hydratase-dehydrogenase-epimerase.	0.526
VP1G_02317	VP1G_03103	A0A194UTT6	A0A194UVK8	Uncharacterized protein.	Peroxisomal membrane protein PER10.	0.562
VP1G_02317	VP1G_03970	A0A194UTT6	A0A194UY46	Uncharacterized protein.	Malonyl CoA-acyl carrier protein transacylase.	0.654
VP1G_02317	VP1G_04539	A0A194UTT6	A0A194UZY8	Uncharacterized protein.	Peroxisome biogenesis factor 10.	0.505