STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP1G_04748Uncharacterized protein. (167 aa)    
Predicted Functional Partners:
VP1G_07999
DNA polymerase delta small subunit.
    
 0.614
VP1G_07851
Survival motor neuron-like protein 1.
    
 0.608
VP1G_08089
Crossover junction endonuclease MUS81.
    
 0.608
VP1G_04574
DNA polymerase.
   
 0.605
VP1G_01219
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.599
VP1G_05131
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
  0.596
VP1G_04712
Small nuclear ribonucleoprotein G.
    
  0.589
VP1G_06147
Histone acetyltransferase type B subunit 2.
    
  0.583
VP1G_04937
DNA repair protein rad16.
    
 0.582
VP1G_00170
Small nuclear ribonucleoprotein Sm D2.
    
  0.566
Your Current Organism:
Valsa mali
NCBI taxonomy Id: 694573
Other names: V. mali var. pyri, Valsa mali var. pyri, Valsa sp. DD-2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.