STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP1G_06761ERAD-associated E3 ubiquitin-protein ligase HRD1. (240 aa)    
Predicted Functional Partners:
VP1G_00071
Uncharacterized protein.
    
  0.537
VP1G_02577
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
  0.524
VP1G_08853
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
  0.524
VP1G_09331
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
  0.524
VP1G_10297
mRNA export factor mex67.
    
  0.512
VP1G_00146
Pre-mRNA-processing protein 45.
    
  0.498
VP1G_01310
Cell cycle serine/threonine-protein kinase CDC5/MSD2.
   
 0.473
VP1G_08979
Putative urea carboxylase.
    
  0.470
VP1G_09246
Chromatin modification-related protein eaf3.
   
  0.461
VP1G_00164
Uncharacterized protein.
    
  0.455
Your Current Organism:
Valsa mali
NCBI taxonomy Id: 694573
Other names: V. mali var. pyri, Valsa mali var. pyri, Valsa sp. DD-2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.