STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VP1G_07676Uncharacterized protein. (334 aa)    
Predicted Functional Partners:
VP1G_04276
Histone H3-like centromeric protein hH3v.
   
 0.660
VP1G_07170
Histone H3; Belongs to the histone H3 family.
   
 0.660
VP1G_02631
Ribosome biogenesis protein tsr1.
   
  0.614
VP1G_07917
Uncharacterized protein.
   
  0.609
VP1G_03040
Uncharacterized protein.
    
  0.592
VP1G_07113
40S ribosomal protein S27.
    
  0.591
VP1G_08587
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
  0.591
VP1G_08797
Velvet domain-containing protein.
    
 0.591
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
  0.590
VP1G_06491
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.590
Your Current Organism:
Valsa mali
NCBI taxonomy Id: 694573
Other names: V. mali var. pyri, Valsa mali var. pyri, Valsa sp. DD-2016
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.