SPRG_10988 protein (Saprolegnia parasitica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPRG_10988

UBX domain-containing protein. (426 aa)

Predicted Functional Partners:

SPRG_10869

0.998

KATNAL2

0.984

SPRG_08361

0.964

SPRG_02756

0.964

SPRG_19093

0.964

SPRG_11025

0.956

SPRG_11119

0.956

SPRG_19245

0.936

SPRG_11463

0.885

SPRG_05004

0.885

Your Current Organism:

Saprolegnia parasitica

NCBI taxonomy Id: 695850
Other names: S. parasitica CBS 223.65, Saprolegnia parasitica CBS 223.65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KATNAL2	SPRG_02756	A0A067CUG2	A0A067CZR0	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	UBX domain-containing protein.	0.802
KATNAL2	SPRG_08361	A0A067CUG2	A0A067CIC9	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Uncharacterized protein.	0.802
KATNAL2	SPRG_10869	A0A067CUG2	A0A067CB92	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	MPN domain-containing protein.	0.985
KATNAL2	SPRG_10988	A0A067CUG2	A0A067BWQ2	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	UBX domain-containing protein.	0.984
KATNAL2	SPRG_11025	A0A067CUG2	A0A067C867	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.851
KATNAL2	SPRG_11119	A0A067CUG2	A0A067CAZ7	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Uncharacterized protein.	0.851
KATNAL2	SPRG_19093	A0A067CUG2	A0A067D5J6	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	Uncharacterized protein.	0.802
KATNAL2	SPRG_19245	A0A067CUG2	A0A067CSD8	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	UBX domain-containing protein.	0.710
SPRG_02756	KATNAL2	A0A067CZR0	A0A067CUG2	UBX domain-containing protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.802
SPRG_02756	SPRG_08361	A0A067CZR0	A0A067CIC9	UBX domain-containing protein.	Uncharacterized protein.	0.908
SPRG_02756	SPRG_10869	A0A067CZR0	A0A067CB92	UBX domain-containing protein.	MPN domain-containing protein.	0.997
SPRG_02756	SPRG_10988	A0A067CZR0	A0A067BWQ2	UBX domain-containing protein.	UBX domain-containing protein.	0.964
SPRG_02756	SPRG_11025	A0A067CZR0	A0A067C867	UBX domain-containing protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.529
SPRG_02756	SPRG_11119	A0A067CZR0	A0A067CAZ7	UBX domain-containing protein.	Uncharacterized protein.	0.529
SPRG_02756	SPRG_19093	A0A067CZR0	A0A067D5J6	UBX domain-containing protein.	Uncharacterized protein.	0.928
SPRG_02756	SPRG_19245	A0A067CZR0	A0A067CSD8	UBX domain-containing protein.	UBX domain-containing protein.	0.906
SPRG_05004	SPRG_10988	A0A067CID2	A0A067BWQ2	Uncharacterized protein.	UBX domain-containing protein.	0.885
SPRG_05004	SPRG_19245	A0A067CID2	A0A067CSD8	Uncharacterized protein.	UBX domain-containing protein.	0.410
SPRG_08361	KATNAL2	A0A067CIC9	A0A067CUG2	Uncharacterized protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.802
SPRG_08361	SPRG_02756	A0A067CIC9	A0A067CZR0	Uncharacterized protein.	UBX domain-containing protein.	0.908