STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB95183.1ABC-2 type transport system ATP-binding protein. (335 aa)    
Predicted Functional Partners:
SMB95184.1
ABC-2 type transport system permease protein.
 
 0.949
SMB90321.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 0.774
SMB96862.1
ATPases of the AAA+ class; Manually curated; Belongs to the AAA ATPase family.
  
   0.710
aspS-2
aspartate--tRNA(Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.
  
     0.622
SMB96006.1
NitT/TauT family transport system ATP-binding protein.
 
  
 
0.599
argS
arginyl-tRNA synthetase.
  
     0.587
SMB95753.1
V/A-type H+-transporting ATPase subunit K.
  
 
   0.550
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.544
SMB95180.1
Superoxide dismutase, Cu-Zn family.
   
   0.543
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.539
Your Current Organism:
Deinococcus hopiensis
NCBI taxonomy Id: 695939
Other names: D. hopiensis KR-140, Deinococcus hopiensis DSM 18049, Deinococcus hopiensis KR-140, Deinococcus hopiensis str. KR-140, Deinococcus hopiensis strain KR-140
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.