Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BARCL_0146Homologs of previously reported genes of unknown function. (284 aa)    
Predicted Functional Partners:
ftsX
Cell division protein.
 
 
 
 0.797
ctpA
Carboxy-terminal protease; Belongs to the peptidase S41A family.
    
 
 0.719
mltB
Peptidoglycan-binding protein.
 
   
 0.663
pepA
Leucyl aminopeptidase; Belongs to the peptidase M17 family.
       0.620
ftsE
Fragment of acetyl-CoA synthetase (part 4); Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.617
BARCL_1336
Homologs of previously reported genes of unknown function.
 
     0.571
coaA
Pantothenate kinase.
       0.487
BARCL_0123
Homologs of previously reported genes of unknown function.
  
     0.414
BARCL_0036
Putative ATPase/Phosphotransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.411
Your Current Organism:
Bartonella clarridgeiae
NCBI taxonomy Id: 696125
Other names: B. clarridgeiae 73, Bartonella clarridgeiae 73, Bartonella clarridgeiae str. 73, Bartonella clarridgeiae strain 73
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