Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
hbpEHemin-binding protein E. (288 aa)    
Predicted Functional Partners:
BARCL_0408
Omp43; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.813
BARCL_0226
Homologs of previously reported genes of unknown function.
  
     0.772
BARCL_0387
Cytochrome c-type biogenesis protein (fragment).
  
     0.771
BARCL_0088
Homologs of previously reported genes of unknown function.
  
     0.768
BARCL_0670
Homologs of previously reported genes of unknown function.
  
     0.764
BARCL_0585
Peptidyl-prolyl cis-trans isomerase D.
  
 
   0.763
BARCL_0435
Homologs of previously reported genes of unknown function.
  
     0.759
BARCL_0834
Homologs of previously reported genes of unknown function.
  
     0.752
BARCL_0674
Homologs of previously reported genes of unknown function.
  
     0.748
BARCL_0860
Homologs of previously reported genes of unknown function.
  
     0.740
Your Current Organism:
Bartonella clarridgeiae
NCBI taxonomy Id: 696125
Other names: B. clarridgeiae 73, Bartonella clarridgeiae 73, Bartonella clarridgeiae str. 73, Bartonella clarridgeiae strain 73
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