Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BARCL_0328Homologs of previously reported genes of unknown function. (166 aa)    
Predicted Functional Partners:
BARCL_0160
Homologs of previously reported genes of unknown function.
  
     0.602
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.544
BARCL_0327
Homologs of previously reported genes of unknown function.
       0.535
BARCL_1248
Homologs of previously reported genes of unknown function; Belongs to the UPF0335 family.
  
     0.534
BARCL_1057
Homologs of previously reported genes of unknown function.
  
     0.530
BARCL_1254
Homologs of previously reported genes of unknown function.
  
     0.501
BARCL_0561
Putative DNA polymerase III chi subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.497
BARCL_0116
Homologs of previously reported genes of unknown function.
  
     0.494
BARCL_0882
Homologs of previously reported genes of unknown function.
  
     0.473
BARCL_0977
Homologs of previously reported genes of unknown function.
  
     0.450
Your Current Organism:
Bartonella clarridgeiae
NCBI taxonomy Id: 696125
Other names: B. clarridgeiae 73, Bartonella clarridgeiae 73, Bartonella clarridgeiae str. 73, Bartonella clarridgeiae strain 73
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