Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BARCL_0769Homologs of previously reported genes of unknown function. (133 aa)    
Predicted Functional Partners:
sufC
ABC transporter ATP-binding protein.
 
  
 0.909
sufD
ABC-type transport system.
 
   
 0.901
sufS
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.871
sufB
ABC transporter subunit.
 
   
 0.818
BARCL_0813
Homologs of previously reported genes of unknown function.
  
    0.750
BARCL_0774
Putative cysteine desulfurase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.532
BARCL_0775
Homologs of previously reported genes of unknown function.
       0.448
BARCL_0497
Acyl dehydratase.
  
  
 0.409
Your Current Organism:
Bartonella clarridgeiae
NCBI taxonomy Id: 696125
Other names: B. clarridgeiae 73, Bartonella clarridgeiae 73, Bartonella clarridgeiae str. 73, Bartonella clarridgeiae strain 73
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