Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gltIAmino-acid ABC transporter binding protein. (301 aa)    
Predicted Functional Partners:
gltJ
Glutamate/aspartate transport system permease protein GltJ.
 
 0.981
gltK
Glutamate/aspartate transport system permease protein gltK.
 
 0.975
gltL
Glutamate /aspartate transport ATP-binding protein.
 
 0.971
BARCL_0869
ATP-binding component of an ABC transporter.
 
 
 0.720
BARCL_0700
Sensor histidine kinase.
 
 
 
 0.560
BARCL_0362
Homologs of previously reported genes of unknown function.
     
 0.551
BARCL_0867
ABC transporter, permease protein.
 
 
 0.515
xthA
Exodeoxyribonuclease III.
       0.477
Your Current Organism:
Bartonella clarridgeiae
NCBI taxonomy Id: 696125
Other names: B. clarridgeiae 73, Bartonella clarridgeiae 73, Bartonella clarridgeiae str. 73, Bartonella clarridgeiae strain 73
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