Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BARCL_1202Homologs of previously reported genes of unknown function. (290 aa)    
Predicted Functional Partners:
BARCL_1203
Protein of unknown function; No homology to any previously reported sequences.
 
     0.959
BARCL_1179
Phage-related protein.
 
     0.791
BARCL_0670
Homologs of previously reported genes of unknown function.
 
     0.782
BARCL_1178
Phage-related protein.
 
     0.777
BARCL_1198
Phage related protein.
 
     0.776
BARCL_0145
Homologs of previously reported genes of unknown function.
  
     0.774
BARCL_0256
Fragment of Bartonella effector protein (Bep); Gene remnant; factor.
  
     0.774
BARCL_0475
Putative autotransporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.774
BARCL_0476
Homologs of previously reported genes of unknown function.
  
     0.774
BARCL_1020
Homologs of previously reported genes of unknown function.
  
     0.774
Your Current Organism:
Bartonella clarridgeiae
NCBI taxonomy Id: 696125
Other names: B. clarridgeiae 73, Bartonella clarridgeiae 73, Bartonella clarridgeiae str. 73, Bartonella clarridgeiae strain 73
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