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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB4Type IV secretion system protein VirB4. (748 aa)    
Predicted Functional Partners:
virB8
Type IV secretion system protein VirB8.
 
 
 0.992
virB10
Type IV secretion system protein VirB10.
 
  
 0.990
virD4
Type IV secretion system protein VirD4.
 
  
 0.943
virB9
Type IV secretion system protein VirB9.
 
  
 0.942
AEI89179.1
Putative type IV secretion system protein.
 
  
 0.942
AEI89180.1
Putative type IV secretion system protein.
  
 
 0.927
AEI88997.1
Type IV secretion system protein.
 
  
 0.892
AEI88996.1
Putative type IV secretion system protein.
 
  
 0.890
virB2
Type IV secretion system protein VirB2.
   
 
 0.777
AEI88606.1
Hypothetical protein.
       0.773
Your Current Organism:
Midichloria mitochondrii
NCBI taxonomy Id: 696127
Other names: C. Midichloria mitochondrii IricVA, Candidatus Midichloria mitochondrii IricVA, Candidatus Midichloria mitochondrii str. IricVA, Candidatus Midichloria mitochondrii strain IricVA, Midichloria mitochondrii IricVA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.