Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI88874.1Hypothetical protein. (480 aa)    
Predicted Functional Partners:
ccmF
Cytochrome c-type biogenesis protein.
  
 
 0.803
AEI88875.1
Hypothetical protein.
       0.768
AEI88876.1
Intradiol ring-cleavage dioxygenase.
 
     0.738
AEI88714.1
Glycosyl transferase family protein.
 
     0.737
AEI88996.1
Putative type IV secretion system protein.
  
     0.693
AEI88708.1
Uncharacterized protein conserved in bacteria.
  
     0.689
AEI88943.1
Putative exopolyphosphatase.
  
     0.651
ccmH
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
  
  
 0.629
AEI89158.1
Putative periplasmic sensor histidine kinase.
 
     0.625
rbn
Ribonuclease BN.
 
     0.611
Your Current Organism:
Midichloria mitochondrii
NCBI taxonomy Id: 696127
Other names: C. Midichloria mitochondrii IricVA, Candidatus Midichloria mitochondrii IricVA, Candidatus Midichloria mitochondrii str. IricVA, Candidatus Midichloria mitochondrii strain IricVA, Midichloria mitochondrii IricVA
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