STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG58448.1KEGG: drm:Dred_0079 peptidase U57, YabG; TIGRFAM: sporulation peptidase YabG; PFAM: peptidase U57 YabG. (305 aa)    
Predicted Functional Partners:
AEG58449.1
KEGG: drm:Dred_0080 hypothetical protein.
       0.646
AEG61298.1
TIGRFAM: stage III sporulation protein AD; KEGG: drm:Dred_1059 putative sporulation protein.
  
     0.615
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.607
AEG61295.1
KEGG: drm:Dred_1062 hypothetical protein.
  
     0.606
AEG61297.1
KEGG: drm:Dred_1060 hypothetical protein; TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE.
  
   
 0.597
AEG61144.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.574
AEG58489.1
KEGG: drm:Dred_0118 YabP family protein; TIGRFAM: sporulation protein YabP; PFAM: YabP family protein.
  
   
 0.556
AEG58426.1
PFAM: 3D domain-containing protein; G5 domain protein; protein of unknown function DUF348; KEGG: drm:Dred_0070 3D domain-containing protein.
 
     0.546
AEG61630.1
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: drm:Dred_0468 small acid-soluble spore protein, alpha/beta type.
  
     0.544
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.543
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.