STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG58639.1KEGG: drm:Dred_0266 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V. (390 aa)    
Predicted Functional Partners:
AEG60251.1
PFAM: nitrogen-fixing NifU domain protein; KEGG: ckr:CKR_3218 hypothetical protein.
  
 
 0.962
AEG61381.1
KEGG: drm:Dred_0765 NifU domain-containing protein; TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: nitrogen-fixing NifU domain protein.
  
 
 0.962
AEG59115.1
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: drm:Dred_2799 endonuclease/exonuclease/phosphatase.
    
   0.840
AEG61060.1
KEGG: drm:Dred_1242 SirA family protein; TIGRFAM: selenium metabolism protein YedF; PFAM: SirA-like domain-containing protein; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.820
AEG58808.1
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; [2Fe-2S]-binding domain-containing protein; ferredoxin; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: dae:Dtox_3440 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding.
  
  
 0.700
AEG58724.1
PFAM: SirA-like domain-containing protein; KEGG: pth:PTH_0551 redox protein; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.636
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
   
 0.611
AEG59838.1
KEGG: drm:Dred_2185 selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3.
 
   
 0.522
AEG61014.1
PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: drm:Dred_1278 2-hydroxyglutaryl-CoA dehydratase, D-component.
 
     0.508
AEG58638.1
KEGG: drm:Dred_0265 cell wall hydrolase/autolysin; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
     
 0.506
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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