STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG58663.1KEGG: pth:PTH_1557 hypothetical protein. (577 aa)    
Predicted Functional Partners:
AEG59452.1
PFAM: protein of unknown function DUF324; KEGG: rca:Rcas_4238 hypothetical protein.
  
     0.640
AEG59451.1
KEGG: rca:Rcas_4239 hypothetical protein.
  
     0.610
AEG58978.1
PFAM: membrane-bound metal-dependent hydrolase; KEGG: drm:Dred_0844 membrane-bound metal-dependent hydrolase.
  
     0.531
AEG58701.1
PFAM: WD40-like beta Propeller containing protein; KEGG: pth:PTH_0765 signaling protein.
  
     0.517
AEG59449.1
TIGRFAM: CRISPR-associated protein, Csx11 family; KEGG: cag:Cagg_3827 CRISPR-associated protein, Csx11 family.
  
     0.497
AEG59448.1
PFAM: protein of unknown function DUF324; KEGG: rca:Rcas_4242 hypothetical protein.
  
     0.477
AEG61522.1
KEGG: drm:Dred_0704 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
     0.453
AEG59450.1
KEGG: rca:Rcas_4240 CRISPR-associated RAMP Cmr4 family protein family protein; TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324.
  
     0.450
dacA
Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
       0.447
AEG58665.1
PFAM: YbbR family protein; KEGG: drm:Dred_0293 YbbR family protein.
       0.447
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.