STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG58726.1Radical SAM domain protein; KEGG: ctc:CTC00846 metallo cofactor biosynthesis protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (300 aa)    
Predicted Functional Partners:
AEG59888.1
KEGG: drm:Dred_2161 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
  
  0.939
AEG59890.1
KEGG: drm:Dred_2159 radical SAM domain-containing protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
  
  0.925
AEG58727.1
Radical SAM domain protein; KEGG: ctc:CTC00845 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
 
    0.864
AEG58728.1
Helix-turn-helix domain protein; KEGG: bwe:BcerKBAB4_5634 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.809
AEG58392.1
Cyclic nucleotide-binding protein; KEGG: pth:PTH_2806 transcriptional regulator; PFAM: cyclic nucleotide-binding; sigma-54 factor interaction domain-containing protein; SMART: cyclic nucleotide-binding.
  
  
 0.432
AEG59892.1
KEGG: drm:Dred_2157 AsnC family transcriptional regulator.
 
  
 0.419
AEG59801.1
KEGG: adg:Adeg_1254 putative transcriptional regulator, AsnC family.
 
  
 0.418
AEG58729.1
PFAM: peptidase M20; KEGG: toc:Toce_1998 peptidase M20.
       0.411
AEG59891.1
SMART: Transcription regulator AsnC-type; KEGG: drm:Dred_2158 AsnC family transcriptional regulator.
 
  
 0.406
AEG59887.1
KEGG: drm:Dred_2162 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4.
  
  
 0.400
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.