STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG58945.1PFAM: SAF domain protein; KEGG: drm:Dred_0804 hypothetical protein. (212 aa)    
Predicted Functional Partners:
AEG58942.1
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: drm:Dred_0799 diguanylate cyclase; SMART: GGDEF domain containing protein.
  
  
 0.927
AEG58943.1
KEGG: drm:Dred_0800 chromosome partitioning ATPase protein-like protein.
  
  
 0.906
AEG58948.1
PFAM: Type II secretion system F domain; KEGG: aco:Amico_1198 type II secretion system F domain protein.
  
  
 0.868
AEG58949.1
PFAM: Type II secretion system F domain; KEGG: nth:Nther_2314 type II secretion system protein.
  
  
 0.850
AEG58947.1
PFAM: type II secretion system protein E; KEGG: bbe:BBR47_05700 hypothetical protein.
  
  
 0.836
AEG58953.1
PFAM: TadE family protein; KEGG: dae:Dtox_2479 TadE family protein.
  
  
 0.796
AEG58944.1
KEGG: drm:Dred_0801 hypothetical protein.
       0.781
AEG58946.1
Hypothetical protein; KEGG: adg:Adeg_0779 chromosome partitioning ATPase.
  
    0.761
AEG58941.1
PFAM: Peptidase M23; Lytic transglycosylase catalytic; KEGG: dae:Dtox_2504 peptidase M23.
       0.701
AEG61965.1
PFAM: peptidase A24A prepilin type IV; KEGG: dae:Dtox_2480 peptidase A24A prepilin type IV.
  
  
 0.689
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.