STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG58948.1PFAM: Type II secretion system F domain; KEGG: aco:Amico_1198 type II secretion system F domain protein. (298 aa)    
Predicted Functional Partners:
AEG58947.1
PFAM: type II secretion system protein E; KEGG: bbe:BBR47_05700 hypothetical protein.
 
  
 0.974
AEG58949.1
PFAM: Type II secretion system F domain; KEGG: nth:Nther_2314 type II secretion system protein.
 
     0.938
AEG58943.1
KEGG: drm:Dred_0800 chromosome partitioning ATPase protein-like protein.
 
  
 0.922
AEG58942.1
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: drm:Dred_0799 diguanylate cyclase; SMART: GGDEF domain containing protein.
  
  
 0.901
AEG61970.1
PFAM: type II secretion system protein E; KEGG: dae:Dtox_2488 type II secretion system protein E.
 
  
 0.891
AEG58945.1
PFAM: SAF domain protein; KEGG: drm:Dred_0804 hypothetical protein.
  
  
 0.868
AEG61965.1
PFAM: peptidase A24A prepilin type IV; KEGG: dae:Dtox_2480 peptidase A24A prepilin type IV.
 
  
 0.867
AEG58946.1
Hypothetical protein; KEGG: adg:Adeg_0779 chromosome partitioning ATPase.
 
  
 0.816
AEG61968.1
PFAM: Type II secretion system F domain; KEGG: dae:Dtox_2486 type II secretion system protein.
 
     0.781
AEG61972.1
KEGG: dae:Dtox_2491 Flp pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein.
 
  
 0.777
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.