STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG58983.1Hypothetical protein; Manually curated; KEGG: drm:Dred_0988 hypothetical protein. (222 aa)    
Predicted Functional Partners:
AEG59904.1
KEGG: drm:Dred_2147 hypothetical protein.
 
     0.751
AEG60640.1
KEGG: drm:Dred_1411 hypothetical protein.
  
     0.742
AEG60890.1
PFAM: WD40-like beta Propeller containing protein; KEGG: drm:Dred_1354 WD40 domain-containing protein.
  
     0.739
AEG60889.1
KEGG: drm:Dred_1355 hypothetical protein.
  
     0.717
AEG61585.1
PFAM: protein of unknown function UPF0153; KEGG: drm:Dred_0632 hypothetical protein.
  
     0.717
AEG58997.1
Helix-turn-helix domain protein; KEGG: drm:Dred_0889 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.679
AEG59926.1
KEGG: drm:Dred_0606 hypothetical protein.
  
     0.678
AEG60907.1
KEGG: drm:Dred_1342 hypothetical protein.
  
     0.669
AEG62086.1
PFAM: Colicin V production protein; KEGG: drm:Dred_3312 hypothetical protein.
  
     0.625
AEG59575.1
KEGG: drm:Dred_2345 pyrrolo-quinoline quinone.
  
     0.617
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.