STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59002.1KEGG: drm:Dred_0892 cobyrinic acid a,c-diamide synthase. (257 aa)    
Predicted Functional Partners:
AEG59003.1
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: drm:Dred_0893 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
 
 
 0.988
AEG62092.1
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: drm:Dred_3320 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
 
 
 0.950
AEG61947.1
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: tte:TTE2081 transcriptional regulator; SMART: ParB domain protein nuclease; Belongs to the ParB family.
 
 
 0.913
AEG61762.1
KEGG: hmo:HM1_2946 DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.780
AEG59004.1
KEGG: drm:Dred_0895 hypothetical protein.
       0.746
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.642
AEG58670.1
KEGG: pde:Pden_3840 hypothetical protein.
  
 
 0.626
AEG59005.1
KEGG: pdi:BDI_0889 hypothetical protein.
       0.588
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.584
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
   
    0.537
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.