STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59030.1PFAM: protein of unknown function DUF583; KEGG: hmu:Hmuk_1143 protein of unknown function DUF583. (480 aa)    
Predicted Functional Partners:
AEG59032.1
KEGG: sth:STH845 RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2.
       0.778
AEG59031.1
Hypothetical protein; KEGG: nth:Nther_1893 putative transmembrane anti-sigma factor.
       0.773
AEG59920.1
KEGG: slp:Slip_1454 hypothetical protein.
 
     0.533
AEG59033.1
Coproporphyrinogen dehydrogenase; PFAM: Radical SAM domain protein; KEGG: drm:Dred_2881 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB.
       0.468
AEG59503.1
KEGG: drm:Dred_2415 flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: flagellar protein FliS.
    
 
 0.428
AEG59522.1
PFAM: surface presentation of antigens (SPOA) protein; KEGG: drm:Dred_2398 surface presentation of antigens (SpoA) protein.
    
   0.406
AEG59537.1
PFAM: CheC domain protein; KEGG: drm:Dred_2383 CheC, inhibitor of MCP methylation.
    
   0.406
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.