Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEG59085.1PFAM: transcriptional regulator PadR family protein; KEGG: amt:Amet_1565 PadR-like family transcriptional regulator. (112 aa)    
Predicted Functional Partners:
AEG59712.1
PFAM: transcriptional regulator PadR family protein; KEGG: afl:Aflv_0293 predicted transcriptional regulator, PadR family.
  
     0.770
AEG61136.1
KEGG: dhd:Dhaf_3296 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
    0.449
AEG59086.1
PFAM: helix-turn-helix HxlR type; KEGG: toc:Toce_1961 transcriptional regulator.
  
    0.423
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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