STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59144.1KEGG: drm:Dred_2739 NLP/P60 protein; PFAM: NLP/P60 protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM. (216 aa)    
Predicted Functional Partners:
AEG58939.1
KEGG: dae:Dtox_2508 hypothetical protein.
  
  
 0.696
AEG58432.1
KEGG: drm:Dred_0071 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1.
   
    0.578
AEG59199.1
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SH3 type 3 domain protein; KEGG: drm:Dred_2693 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin; SH3 domain protein.
  
 0.424
AEG59143.1
KEGG: drm:Dred_2741 phospholipase C zinc-binding protein; PFAM: phospholipase C zinc-binding protein; SMART: phospholipase C zinc-binding protein.
       0.409
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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