STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59167.1KEGG: drm:Dred_2721 iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor. (162 aa)    
Predicted Functional Partners:
AEG61471.1
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: dae:Dtox_0796 NADH ubiquinone oxidoreductase 20 kDa subunit.
    
   0.613
AEG58444.1
KEGG: dhd:Dhaf_0031 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.468
AEG59106.1
KEGG: drm:Dred_2805 glutamate synthase (ferredoxin); PFAM: glutamine amidotransferase class-II; glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein.
       0.454
AEG59916.1
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; KEGG: drm:Dred_2145 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
  
  
 0.445
AEG61446.1
PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; KEGG: hmo:HM1_0674 nad dependent epimerase/dehydratase family protein.
   
    0.440
cobT
Nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
       0.429
AEG58675.1
PFAM: ferric-uptake regulator; KEGG: lba:Lebu_2013 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
  
 0.415
AEG58443.1
PFAM: periplasmic solute binding protein; KEGG: dhd:Dhaf_0030 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.402
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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