STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59198.1PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: drm:Dred_2694 ErfK/YbiS/YcfS/YnhG family protein. (309 aa)    
Predicted Functional Partners:
AEG59199.1
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SH3 type 3 domain protein; KEGG: drm:Dred_2693 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin; SH3 domain protein.
     
 0.833
AEG61988.1
PFAM: Peptidase M23; Lytic transglycosylase catalytic; KEGG: drm:Dred_0935 peptidase M23B.
  
  
 0.738
AEG59942.1
KEGG: drm:Dred_2102 cell wall hydrolase, SleB; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
   
 0.658
AEG59916.1
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; KEGG: drm:Dred_2145 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver.
  
  
 0.613
AEG60758.1
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pth:PTH_0095 hypothetical protein.
 
  
 0.574
AEG61558.1
SMART: PASTA domain containing protein; TIGRFAM: stage V sporulation protein D; KEGG: drm:Dred_0669 stage V sporulation protein D; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein.
      
 0.544
AEG59116.1
KEGG: drm:Dred_2798 cell wall hydrolase, SleB; PFAM: cell wall hydrolase SleB; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
     
 0.543
AEG59630.1
PFAM: lipolytic protein G-D-S-L family; KEGG: drm:Dred_2310 GDSL family lipase.
  
  
 0.513
AEG59887.1
KEGG: drm:Dred_2162 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4.
     
 0.481
AEG58393.1
SMART: AAA ATPase; KEGG: drm:Dred_0041 phosphoribulokinase/uridine kinase.
     
 0.479
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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