STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59259.1PFAM: SMC domain protein; KEGG: drm:Dred_2570 SMC domain-containing protein. (985 aa)    
Predicted Functional Partners:
AEG59258.1
PFAM: metallophosphoesterase; KEGG: drm:Dred_2571 metallophosphoesterase.
 
 0.999
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.980
AEG58637.1
TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; KEGG: drm:Dred_1261 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein.
  
 0.832
AEG60058.1
PFAM: AAA-4 family protein; KEGG: drm:Dred_2059 putative transcriptional regulator.
 
     0.783
AEG61213.1
PFAM: CRISPR-associated protein TM1802; KEGG: drm:Dred_0536 hypothetical protein.
  
     0.772
AEG60940.1
PFAM: hypothetical protein; KEGG: drm:Dred_1314 hypothetical protein.
 
     0.771
AEG61121.1
PFAM: Ion transport 2 domain protein; KEGG: drm:Dred_1173 ion transport 2 domain-containing protein.
  
     0.769
AEG59140.1
KEGG: drm:Dred_2743 hypothetical protein.
  
     0.744
AEG60218.1
KEGG: drm:Dred_1904 hypothetical protein.
  
     0.730
AEG61211.1
TIGRFAM: CRISPR-associated protein Cas5; KEGG: drm:Dred_0538 CRISPR-associated Cas5 family Hmari subtype protein.
  
     0.730
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.