STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG59285.1PFAM: FAD dependent oxidoreductase; KEGG: drm:Dred_2557 dehydrogenase (flavoproteins). (370 aa)    
Predicted Functional Partners:
AEG59286.1
KEGG: drm:Dred_2556 ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, periplasmic component.
 
     0.842
AEG60907.1
KEGG: drm:Dred_1342 hypothetical protein.
 
     0.782
AEG61921.1
PFAM: Domain of unknown function DUF1934; KEGG: drm:Dred_3184 hypothetical protein.
  
     0.705
AEG58378.1
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: dae:Dtox_1936 electron transfer flavoprotein alpha/beta-subunit.
  
 
 0.644
AEG58379.1
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: drm:Dred_1538 electron transfer flavoprotein beta-subunit.
  
 
 0.631
AEG58376.1
KEGG: drm:Dred_1541 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
 
 0.592
AEG60710.1
Sporulation protein YtxC; KEGG: drm:Dred_1610 hypothetical protein; TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC.
  
     0.576
AEG58490.1
KEGG: drm:Dred_0119 hypothetical protein; TIGRFAM: spore cortex biosynthesis protein YabQ; PFAM: Spore cortex biosynthesis protein, YabQ-like.
  
     0.575
AEG58768.1
PFAM: ubiquitin-associated- domain-containing protein; KEGG: drm:Dred_1536 ubiquitin-associated domain-containing protein.
  
    0.502
AEG60640.1
KEGG: drm:Dred_1411 hypothetical protein.
  
     0.497
Your Current Organism:
Desulfotomaculum ruminis
NCBI taxonomy Id: 696281
Other names: D. ruminis DSM 2154, Desulfotomaculum ruminis ATCC 23193, Desulfotomaculum ruminis DL, Desulfotomaculum ruminis DSM 2154, Desulfotomaculum ruminis str. DSM 2154, Desulfotomaculum ruminis strain DSM 2154
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